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Pharmacological Sciences and Computer Science● Open★ EU-FUNDEDPreview

PhD Position in Deep Learning for Kinase Drug Discovery (ANA-KIN)

Develop resistance-aware AI workflows and deep learning architectures for kinase drug discovery within an EU-funded MSCA Doctoral Network.

Best for:Best for computer science or AI graduates with a strong machine learning background and an interest in structural biology and drug discovery.

Leiden University · Leiden, Netherlands · R1 · First-stage researcher
More professors at Leiden University
deep learningcheminformaticsdrug discoveryprotein kinasesmolecular modelingallosteric modulation
Deadline
Nov 12, 2026
29 days
Funding
Salaried
€3.2k–€4.1k/mo
Start date
Late 2026
Full-time
Location
Leiden
Netherlands

Overview

Leiden University invites applications for a 4-year PhD position (Doctoral Candidate 10) within the Marie Skłodowska-Curie Doctoral Network ANA-KIN, focusing on computational drug discovery. The project centers on designing deep learning architectures that integrate text-mined, cheminformatic, and biophysical descriptors to predict interface binding, allosteric signatures, and resistance liabilities of kinase ligands. The successful candidate will work within the Computational Drug Discovery group at the Leiden Academic Centre for Drug Research, collaborate closely with international network partners, and complete two research secondments in Belgium. Key expectations include conducting original research, open-sharing models following FAIR principles, participating in network training events, and writing a doctoral dissertation.

PhDMSCA Doctoral Networkartificial intelligencedeep learningcheminformaticskinase inhibitorsdrug designbioinformatics

What you'll do

  • Conduct original and novel research in deep learning, artificial intelligence, and cheminformatics applied to kinase drug discovery.
  • Develop, benchmark, and openly share models, datasets, and decision-support dashboards adhering to FAIR and open-science principles.
  • Collaborate closely with experimental and computational doctoral candidates across the ANA-KIN network.
  • Complete two international research secondments at partner institutions in Belgium (VIB and Skylight Therapeutics).
  • Publish findings in peer-reviewed international journals and present research at scientific conferences.
  • Participate actively in network-wide training events, summer schools, workshops, and educational activities.
  • Write and successfully defend a doctoral dissertation.

Requirements

Degree required: MSc degree in Computer Science, AI, (Computational) Chemistry, Bioinformatics, Biopharmaceutical Sciences, or a relevant related field

Degree offered: PhD

Language: English; excellent oral and written proficiency

Instruction: English

Required skills
  • Good knowledge of and experience with machine learning and deep-learning techniques (e.g., PyTorch)
  • Good knowledge of and experience with cheminformatics and/or computational chemistry (e.g., RDKit, molecular descriptors, docking)
  • Excellent programming skills, preferably in Python
  • Willingness to travel and carry out research secondments at international partner institutions
  • Strong academic writing and communication skills
Nice to have
Interest in structural biology, protein kinases, and drug discoveryAffinity with peptide or biophysical data analysis
Eligibility
  • Candidates must not have been awarded a doctoral degree at the date of recruitment
  • Mobility rule: candidates must not have resided or carried out their main activity in the Netherlands for more than 12 months in the 36 months immediately before the recruitment date

Funding & terms

Type
Salaried
Amount
€3.2k–€4.1k/mo
Duration
48 months
Programme
Marie Skłodowska-Curie Doctoral Network ANA-KIN
EU-FUNDEDEuropean Union Horizon Europe programme

How to apply

Deadline: 2026-11-12

Submit your application online via the university portal by clicking the apply button. Ensure you quote the vacancy number and reference 'ANA-KIN DC10' while uploading all required supporting application documents.

Documents required
  • Application letter
  • CV
  • List of grades
  • Two references
↗Apply on site

Contact

GV
Prof.
Gerard van Westen
Faculty of Science
Lab
Computational Drug Discovery
Leiden University
Marie Skłodowska-Curie Doctoral Network ANA-KINNetherlands
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