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Biotechnology and Artificial Intelligence● OpenPreview

PhD: Digital Twin Framework for Bioprocess Optimization Using AI and Hybrid Modeling

Develop AI-driven digital twins to optimize bioprocesses for sustainable metabolite production.

Best for:Best for candidates with a strong background in process engineering, computer science, or applied mathematics who are eager to work at the intersection of AI and bioprocess optimization.

INRAE · Toulouse, France · R1 · First-stage researcher
More professors at INRAE
Digital twinsHybrid modelingMachine learningBioprocess optimizationReinforcement learningMicrobial systems engineering
Deadline
—
Funding
Salaried
€2.3k/mo
Start date
2026-11-01
Full-time
Location
Toulouse
France

Overview

This PhD project focuses on creating advanced digital tools—combining machine learning, hybrid modeling, and reinforcement learning—to optimize bioprocesses. The research will integrate omics data, physical models, and data-driven approaches to predict and enhance metabolite production in microbial systems. The candidate will work within an interdisciplinary team across three INRAE laboratories, applying Design-Build-Test-Learn cycles to refine bioprocess efficiency. The position offers a salaried contract, full social benefits, and opportunities for international conference participation. The project aligns with INRAE’s mission to address global challenges in agriculture, food, and environmental sustainability.

digital twinbioprocess optimizationmachine learninghybrid modelingreinforcement learningmicrobial engineeringprocess controlAI in biotechnology

What you'll do

  • Develop AI-driven digital twin frameworks to simulate and optimize bioprocesses
  • Integrate omics data, physical models, and machine learning for predictive modeling
  • Design and implement reinforcement learning algorithms for process optimization
  • Collaborate with interdisciplinary teams across three INRAE laboratories
  • Conduct Design-Build-Test-Learn cycles to refine bioprocess efficiency
  • Publish research findings in peer-reviewed journals and present at international conferences
  • Contribute to the development of soft sensors and fault-detection systems for bioreactors
  • Optimize metabolite production in microbial systems using hybrid modeling approaches

Requirements

Degree required: Master’s degree (or equivalent) in Computer Science Engineering, Bio and Process Engineering, Computer Science, Mathematics, or a related field

Degree offered: PhD

Language: English (required); French (advantageous but not required)

Instruction: English and French

Required skills
  • Proficiency in machine learning and statistical modeling
  • Experience with programming languages (Python preferred)
  • Strong background in process engineering or biotechnology
  • Ability to work in interdisciplinary teams
  • Excellent written and oral communication skills in English
Nice to have
Knowledge of FrenchExperience with hybrid modeling or digital twinsFamiliarity with reinforcement learning or optimization algorithmsPrior research experience in bioprocesses or microbial systems
Eligibility
  • No nationality restrictions
  • Open to candidates with a Master’s degree or equivalent

Funding & terms

Type
Salaried
Amount
€2.3k/mo
Duration
3 years
Programme
INRAE
INRAE

How to apply

Deadline: 2026-09-30 (Europe/Paris)

Submit a CV and motivation letter via email to the supervisors. Include academic transcripts, a research statement, and contact details for two referees. Ensure all documents are in English or French.

Documents required
  • CV
  • Motivation letter
  • Research statement
  • Academic transcripts (BSc and MSc)
  • Two reference letters
✉Apply by email

Contact

Cesar Aceves Lara· PhD Supervisor

aceves@insa-toulouse.fr

JS
Prof.
Jean-Philippe Steyer
Transfer Interfaces and Mixing (TIM) team at Toulouse Biotechnology Institute (TBI)
Lab
Transfer Interfaces and Mixing (TIM) team at Toulouse Biotechnology Institute (TBI)
INRAE
France
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